People have determined in the past that some of these levels are outright impossible, correct? Whether Tormented/Prospector/Alpha Sector, there are a few that just can't be won. I couldn't tell you if these are them or not, but it's worth looking into.
I doubt anything will be done about it this far down the line, but for me, knowing that I could absolutely never finish 100% of the maps is enough to make me not want to play any of them at all. It's a huge part of the game that has no functional goal to it, nothing I can shoot for, no reason to try. I don't expect anything to change, but I'll ask regardless. Can something be done about them? Can broken missions be removed or revamped? Can I, if nothing else, have access to a functional set of Alpha Missions?